species:   Clros
pid:       PID2265
parent:    cro-mir-57
paralog:   
locus:     CADEHS020000411.2:7493-7568
matures:   ['CUCUUGGUUCUGGCAUC', 'UGCCAGAACCAAGAGA']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000411.2:7493-7568

13 out of bounds
2 alignments
2 proper strand
2 stranded perfect matches

******************                              **************************  
CUCUUGGUUCUGGCAUCACGCAGCGAAAUGCCCGGUUUUUAAAAUGCGUUCUUCAUCGAUGCCAGAACCAAGAGAU
((((((((((((((((((((((..(((((.....))))).....)))))........)))))))))))))))))..
CUCUUGGUUCUGGCAUC----------------------------------------------------------- l=17 a=0 c
-----------------------------------------------------------UGCCAGAACCAAGAGA- l=16 a=0 c*
--CUUGGUUCUGGCAUCA---------------------------------------------------------- l=16 a=1 ma
--------------------------------------------------CUUCAUCGAUGCCAGAACCAAGAG-- l=24 a=0 ma*

--CUUGGUUCUGGCAUCA---------------------------------------------------------- l=16 a=1 (ma)
-UCUUGGUUCUGGCAUCA---------------------------------------------------------- l=17 a=1 

mb-00011
ax-1011101
ku-01
ss-100011111010
fn-111
